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1 " Vim syntax file
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2 " Language: AceDB model files
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3 " Maintainer: Stewart Morris (Stewart.Morris@ed.ac.uk)
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4 " Last change: Thu Apr 26 10:38:01 BST 2001
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5 " URL: http://www.ed.ac.uk/~swmorris/vim/acedb.vim
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6
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7 " Syntax file to handle all $ACEDB/wspec/*.wrm files, primarily models.wrm
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8 " AceDB software is available from http://www.acedb.org
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9
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10 " For version 5.x: Clear all syntax items
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11 " For version 6.x: Quit when a syntax file was already loaded
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12 if version < 600
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13 syntax clear
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14 elseif exists("b:current_syntax")
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15 finish
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16 endif
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17
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18 syn keyword acedbXref XREF
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19 syn keyword acedbModifier UNIQUE REPEAT
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20
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21 syn case ignore
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22 syn keyword acedbModifier Constraints
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23 syn keyword acedbType DateType Int Text Float
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24
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25 " Magic tags from: http://genome.cornell.edu/acedocs/magic/summary.html
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26 syn keyword acedbMagic pick_me_to_call No_cache Non_graphic Title
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27 syn keyword acedbMagic Flipped Centre Extent View Default_view
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28 syn keyword acedbMagic From_map Minimal_view Main_Marker Map Includes
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29 syn keyword acedbMagic Mapping_data More_data Position Ends Left Right
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30 syn keyword acedbMagic Multi_Position Multi_Ends With Error Relative
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31 syn keyword acedbMagic Min Anchor Gmap Grid_map Grid Submenus Cambridge
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32 syn keyword acedbMagic No_buttons Columns Colour Surround_colour Tag
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33 syn keyword acedbMagic Scale_unit Cursor Cursor_on Cursor_unit
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34 syn keyword acedbMagic Locator Magnification Projection_lines_on
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35 syn keyword acedbMagic Marker_points Marker_intervals Contigs
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36 syn keyword acedbMagic Physical_genes Two_point Multi_point Likelihood
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37 syn keyword acedbMagic Point_query Point_yellow Point_width
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38 syn keyword acedbMagic Point_pne Point_pe Point_nne Point_ne
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39 syn keyword acedbMagic Derived_tags DT_query DT_width DT_no_duplicates
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40 syn keyword acedbMagic RH_data RH_query RH_spacing RH_show_all
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41 syn keyword acedbMagic Names_on Width Symbol Colours Pne Pe Nne pMap
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42 syn keyword acedbMagic Sequence Gridded FingerPrint In_Situ Cosmid_grid
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43 syn keyword acedbMagic Layout Lines_at Space_at No_stagger A1_labelling
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44 syn keyword acedbMagic DNA Structure From Source Source_Exons
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45 syn keyword acedbMagic Coding CDS Transcript Assembly_tags Allele
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46 syn keyword acedbMagic Display Colour Frame_sensitive Strand_sensitive
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47 syn keyword acedbMagic Score_bounds Percent Bumpable Width Symbol
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48 syn keyword acedbMagic Blixem_N Address E_mail Paper Reference Title
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49 syn keyword acedbMagic Point_1 Point_2 Calculation Full One_recombinant
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50 syn keyword acedbMagic Tested Selected_trans Backcross Back_one
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51 syn keyword acedbMagic Dom_semi Dom_let Direct Complex_mixed Calc
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52 syn keyword acedbMagic Calc_upper_conf Item_1 Item_2 Results A_non_B
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53 syn keyword acedbMagic Score Score_by_offset Score_by_width
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54 syn keyword acedbMagic Right_priority Blastn Blixem Blixem_X
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55 syn keyword acedbMagic Journal Year Volume Page Author
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56 syn keyword acedbMagic Selected One_all Recs_all One_let
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57 syn keyword acedbMagic Sex_full Sex_one Sex_cis Dom_one Dom_selected
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58 syn keyword acedbMagic Calc_distance Calc_lower_conf Canon_for_cosmid
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59 syn keyword acedbMagic Reversed_physical Points Positive Negative
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60 syn keyword acedbMagic Point_error_scale Point_segregate_ordered
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61 syn keyword acedbMagic Point_symbol Interval_JTM Interval_RD
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62 syn keyword acedbMagic EMBL_feature Homol Feature
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63 syn keyword acedbMagic DT_tag Spacer Spacer_colour Spacer_width
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64 syn keyword acedbMagic RH_positive RH_negative RH_contradictory Query
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65 syn keyword acedbMagic Clone Y_remark PCR_remark Hybridizes_to
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66 syn keyword acedbMagic Row Virtual_row Mixed In_pool Subpool B_non_A
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67 syn keyword acedbMagic Interval_SRK Point_show_marginal Subsequence
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68 syn keyword acedbMagic Visible Properties Transposon
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69
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70 syn match acedbClass "^?\w\+\|^#\w\+"
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71 syn match acedbComment "//.*"
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72 syn region acedbComment start="/\*" end="\*/"
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73 syn match acedbComment "^#\W.*"
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74 syn match acedbHelp "^\*\*\w\+$"
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75 syn match acedbTag "[^^]?\w\+\|[^^]#\w\+"
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76 syn match acedbBlock "//#.\+#$"
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77 syn match acedbOption "^_[DVH]\S\+"
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78 syn match acedbFlag "\s\+-\h\+"
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79 syn match acedbSubclass "^Class"
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80 syn match acedbSubtag "^Visible\|^Is_a_subclass_of\|^Filter\|^Hidden"
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81 syn match acedbNumber "\<\d\+\>"
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82 syn match acedbNumber "\<\d\+\.\d\+\>"
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83 syn match acedbHyb "\<Positive_\w\+\>\|\<Negative\w\+\>"
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84 syn region acedbString start=/"/ end=/"/ skip=/\\"/ oneline
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85
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86 " Rest of syntax highlighting rules start here
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87
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88 " Define the default highlighting.
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89 " For version 5.7 and earlier: only when not done already
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90 " For version 5.8 and later: only when an item doesn't have highlighting yet
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91 if version >= 508 || !exists("did_acedb_syn_inits")
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92 if version < 508
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93 let did_acedb_syn_inits = 1
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94 command -nargs=+ HiLink hi link <args>
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95 else
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96 command -nargs=+ HiLink hi def link <args>
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97 endif
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98
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99 HiLink acedbMagic Special
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100 HiLink acedbHyb Special
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101 HiLink acedbType Type
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102 HiLink acedbOption Type
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103 HiLink acedbSubclass Type
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104 HiLink acedbSubtag Include
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105 HiLink acedbFlag Include
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106 HiLink acedbTag Include
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107 HiLink acedbClass Todo
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108 HiLink acedbHelp Todo
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109 HiLink acedbXref Identifier
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110 HiLink acedbModifier Label
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111 HiLink acedbComment Comment
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112 HiLink acedbBlock ModeMsg
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113 HiLink acedbNumber Number
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114 HiLink acedbString String
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115
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116 delcommand HiLink
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117 endif
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118
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119 let b:current_syntax = "acedb"
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120
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121 " The structure of the model.wrm file is sensitive to mixed tab and space
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122 " indentation and assumes tabs are 8 so...
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123 se ts=8
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